Metabolic pathway databases and model repositories
نویسندگان
چکیده
منابع مشابه
Analysis and Comparison of Metabolic Pathway Databases
Enormous amounts of data result from genome sequencing projects and new experimental methods. Within this tremendous amount of genomic data 30-40 per cent of the genes being identified in an organism remain unknown in terms of their biological function. As a consequence of this lack of information the overall schema of all the biological functions occurring in a specific organism cannot be prop...
متن کاملEfficient Validation of Metabolic Pathway Databases
Metabolic pathway databases such as KEGG contain information on thousands of enzymatic reactions drawn from the biomedical literature. Ensuring consistency of such large metabolic pathways is essential to their proper use. In this paper, we develop an efficient method to determine consistency of an important class of enzymatic reactions, and test the method on the latest release of the KEGG LIG...
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MOTIVATION A number of metabolic databases are available electronically, some with features for querying and visualizing metabolic pathways and regulatory networks. We present a unifying, systematic approach based on PETRI nets for storing, displaying, comparing, searching and simulating such nets from a number of different sources. RESULTS Information from each data source is extracted and c...
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A computerized clinical database is a collection of organized clinical data, created to store, retrieve, analyze, and report meaningful information (McCartney & Barnes, 2012). In today’s datadriven healthcare system, effi cient access to clinical database information is necessary for decisionmaking, managing care, conducting research, performance improvement, and reporting. Three general types ...
متن کاملMetaCyc and AraCyc. Metabolic pathway databases for plant research.
MetaCyc (http://metacyc.org) contains experimentally determined biochemical pathways to be used as a reference database for metabolism. In conjunction with the Pathway Tools software, MetaCyc can be used to computationally predict the metabolic pathway complement of an annotated genome. To increase the breadth of pathways and enzymes, more than 60 plant-specific pathways have been added or upda...
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ژورنال
عنوان ژورنال: Quantitative Biology
سال: 2017
ISSN: 2095-4689,2095-4697
DOI: 10.1007/s40484-017-0108-3